Biochip
Cancer cell during cell division. Credit: National Institutes of Health

Biomedical engineers, electrical engineers, and computer scientists at the University of California, Irvine have developed a new Biochip that can help study tumor heterogeneity to reduce resistance to cancer therapies.

In a paper published today in Advanced Biosystems, the scientists describe how they combined AI, microfluidics, and nanoparticle inkjet printing during a device that permits the examination and differentiation of cancers and healthy tissues at the single-cell level.

Lead author Kushal Joshi, a former UCI graduate student in biomedical engineering said, “Cancer cell and tumor heterogeneity can lead to increased therapeutic resistance and inconsistent outcomes for different patients”.

The team’s novel biochip addresses this problem by allowing precise characterization of a variety of  cells from a sample.

“Single-cell analysis is essential to identify and classify cancer types and study cellular heterogeneity. It’s necessary to understand tumor initiation, progression, and metastasis in order to design better cancer treatment drugs,” said co-author Rahim Esfandyarpour, UCI assistant professor of electrical engineering & computer science as well as biomedical engineering. “Most of the techniques and technologies traditionally used to study cancer are sophisticated, bulky, expensive, and require highly trained operators and long preparation times.”

He said his group overcame these challenges by combining machine learning techniques with accessible inkjet printing and microfluidics technology to develop low-cost, miniaturized biochips that are simple to prototype and capable of classifying various cell types.

In the apparatus, samples travel through microfluidic channels with carefully placed electrodes that monitor differences in the electrical properties of diseased versus healthy cells in a single pass. The UCI researchers’ innovation was to devise a way to prototype key parts of the biochip in about 20 minutes with an inkjet printer, allowing for easy manufacturing in diverse settings. Most of the materials involved are reusable or, if disposable, inexpensive.

Another aspect of the invention is the incorporation of machine learning to manage the large amount of data the tiny system produces. This branch of AI accelerates the processing and analysis of large datasets, finding patterns and associations, predicting precise outcomes, and aiding in rapid and efficient decision-making.

By including machine learning in the biochip’s workflow, the team has improved the accuracy of analysis and reduced the dependency on skilled analysts, which can also make the technology appealing to medical professionals in the developing world, Esfandyarpour said.

“The World Health Organization says that nearly 60 percent of deaths from breast cancer happens because of a lack of early detection programs in countries with meager resources,” he said. “Our work has potential applications in single-cell studies, in tumor heterogeneity studies and, perhaps, in point-of-care cancer diagnostics—especially in developing nations where cost, constrained infrastructure, and limited access to medical technologies are of the utmost importance.”

More information: Kushal Joshi et al, A Machine Learning‐Assisted Nanoparticle‐Printed Biochip for Real‐Time Single Cancer Cell Analysis, Advanced Biosystems (2020). DOI: 10.1002/adbi.202000160

Journal information: Advanced Biosystems